sim4 - Program to align cDNA and genomic DNA

Property Value
Distribution OpenMandriva Cooker
Repository OpenMandriva Contrib Release x86_64
Package name sim4
Package version 20030921
Package release 9-omv2015.0
Package architecture x86_64
Package type rpm
Installed size 87.76 KB
Download size 43.83 KB
Official Mirror
sim4 is a similarity-based tool for aligning an expressed DNA sequence
(EST, cDNA, mRNA) with a genomic sequence for the gene.
It also detects end matches when the two input sequences overlap at one end
(i.e., the start of one sequence overlaps the end of the other)
Reference for Sim4:
L. Florea, G. Hartzell, Z. Zhang, G. Rubin, and W. Miller (1998)
"A computer program for aligning a cDNA sequence with a genomic DNA sequence."
Genome Research 8, 967-974.


Package Version Architecture Repository
sim4-20030921-9-omv2015.0.i586.rpm 20030921 i586 OpenMandriva Contrib Release
sim4 - - -


Name Value - - -


Name Value
sim4 = 20030921-9


Type URL
Binary Package sim4-20030921-9-omv2015.0.x86_64.rpm
Source Package sim4-20030921-9.src.rpm

Install Howto

  1. Enable OpenMandriva Contrib Release repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install sim4 rpm package:
    # urpmi sim4



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