sim4-20030921-9-omv2015.0.x86_64.rpm


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Description

sim4 - Program to align cDNA and genomic DNA

Property Value
Distribution OpenMandriva Cooker
Repository OpenMandriva Contrib x86_64
Package name sim4
Package version 20030921
Package release 9-omv2015.0
Package architecture x86_64
Package type rpm
Installed size 87.76 KB
Download size 43.83 KB
Official Mirror abf-downloads.openmandriva.org
sim4 is a similarity-based tool for aligning an expressed DNA sequence
(EST, cDNA, mRNA) with a genomic sequence for the gene.
It also detects end matches when the two input sequences overlap at one end
(i.e., the start of one sequence overlaps the end of the other)
Reference for Sim4:
L. Florea, G. Hartzell, Z. Zhang, G. Rubin, and W. Miller (1998)
"A computer program for aligning a cDNA sequence with a genomic DNA sequence."
Genome Research 8, 967-974.

Alternatives

Package Version Architecture Repository
sim4-20030921-9-omv2015.0.i586.rpm 20030921 i586 OpenMandriva Contrib
sim4 - - -

Requires

Name Value
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libc.so.6(GLIBC_2.7)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -

Provides

Name Value
sim4 == 20030921-9:2015.0

Download

Type URL
Binary Package sim4-20030921-9-omv2015.0.x86_64.rpm
Source Package sim4-20030921-9.src.rpm

Install Howto

  1. Enable OpenMandriva Contrib repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install sim4 rpm package:
    # urpmi sim4

Files

Path
/usr/bin/sim4
/usr/share/doc/sim4/COPYRIGHT
/usr/share/doc/sim4/README.sim4
/usr/share/doc/sim4/VERSION

See Also

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simutrans-0.120.1.3-1-omv2015.0.x86_64.rpm Transport and Economic Simulation Game
simutrans-pak128-0.120.0-1-omv2015.0.noarch.rpm A complete Simutrans game data package with 128x128 tiles
simutrans-pak64-0.120.1-1-omv2015.0.noarch.rpm A complete Simutrans game data package with 64x64 tiles
singular-3.1.6-1-omv2014.1.x86_64.rpm Computer Algebra System for polynomial computations
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singular-devel-3.1.6-1-omv2014.1.x86_64.rpm Singular development files
singular-devel-3.1.7-2-omv3001.x86_64.rpm Singular development files
singular-doc-3.1.6-1-omv2014.1.x86_64.rpm Singular documentation files
singular-doc-3.1.7-2-omv3001.x86_64.rpm Singular documentation files
singular-emacs-3.1.6-1-omv2014.1.x86_64.rpm Emacs mode for Singular
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