sim4-20030921-9-omv4000.x86_64.rpm


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Description

sim4 - Program to align cDNA and genomic DNA

Property Value
Distribution OpenMandriva Lx 4.0
Repository OpenMandriva Unsupported Release x86_64
Package filename sim4-20030921-9-omv4000.x86_64.rpm
Package name sim4
Package version 20030921
Package release 9-omv4000
Package architecture x86_64
Package type rpm
Category Sciences/Biology
Homepage http://globin.cse.psu.edu/html/docs/sim4.html
License GPL
Maintainer -
Download size 48.56 KB
Installed size 84.81 KB
sim4 is a similarity-based tool for aligning an expressed DNA sequence
(EST, cDNA, mRNA) with a genomic sequence for the gene.
It also detects end matches when the two input sequences overlap at one end
(i.e., the start of one sequence overlaps the end of the other)
Reference for Sim4:
L. Florea, G. Hartzell, Z. Zhang, G. Rubin, and W. Miller (1998)
"A computer program for aligning a cDNA sequence with a genomic DNA sequence."
Genome Research 8, 967-974.

Alternatives

Package Version Architecture Repository
sim4-20030921-9-omv4000.i686.rpm 20030921 i686 OpenMandriva Unsupported Release
sim4-20030921-9-omv2015.0.x86_64.rpm 20030921 x86_64 OpenMandriva Unsupported Release
sim4-20030921-9-omv2015.0.i586.rpm 20030921 i586 OpenMandriva Unsupported Release
sim4 - - -

Requires

Name Value
libc.so.6(GLIBC_2.7)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libm.so.6(GLIBC_2.29)(64bit) -
rtld(GNU_HASH) -

Provides

Name Value
sim4 = 20030921-9
sim4(x86-64) = 20030921-9

Download

Type URL
Mirror abf-downloads.openmandriva.org
Binary Package sim4-20030921-9-omv4000.x86_64.rpm
Source Package sim4-20030921-9.src.rpm

Install Howto

  1. Enable the repository in Software Repository Picker:
    # om-repo-picker
  2. Install sim4 rpm package:
    # dnf install sim4

Files

Path
/usr/bin/sim4
/usr/share/doc/sim4/COPYRIGHT
/usr/share/doc/sim4/README.sim4
/usr/share/doc/sim4/VERSION

See Also

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simpleburn-1.6.4-3-omv4000.x86_64.rpm Basic burning tool for CDs and DVDs
simplyhtml0.11-0.11-4-omv2013.0.x86_64.rpm Application and a java component for rich text processing
simplyhtml0.11-javadoc-0.11-4-omv2013.0.x86_64.rpm Javadoc documentation for simplyhtml0.11
simutrans-0.120.1.3-1-omv2015.0.x86_64.rpm Transport and Economic Simulation Game
simutrans-pak128-0.120.0-1-omv4000.noarch.rpm A complete Simutrans game data package with 128x128 tiles
simutrans-pak64-0.120.1-1-omv4000.noarch.rpm A complete Simutrans game data package with 64x64 tiles
singular-3.1.7-2-omv3001.x86_64.rpm Computer Algebra System for polynomial computations
singular-devel-3.1.7-2-omv3001.x86_64.rpm Singular development files
singular-doc-3.1.7-2-omv3001.x86_64.rpm Singular documentation files
singular-emacs-3.1.7-2-omv3001.x86_64.rpm Emacs mode for Singular
singular-examples-3.1.7-2-omv3001.x86_64.rpm Singular example files
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