tree-puzzle-5.2-6-omv2015.0.i586.rpm


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Description

tree-puzzle - Maximum likelihood analysis for nucleotide, amino acid and two-state data

Distribution: OpenMandriva Lx 3.0
Repository: OpenMandriva Contrib i586
Package name: tree-puzzle
Package version: 5.2
Package release: 6-omv2015.0
Package architecture: i586
Package type: rpm
Installed size: 875.34 KB
Download size: 538.00 KB
Official Mirror: abf-downloads.openmandriva.org
TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. It implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

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Provides

  • tree-puzzle == 5.2-6:2015.0

    Download

    Install Howto

    1. Enable OpenMandriva Contrib repository on Install and Remove Software"
    2. Update packages list:
      # urpmi.update -a
    3. Install tree-puzzle rpm package:
      # urpmi tree-puzzle

    Files

    • /usr/bin/puzzle
    • /usr/share/doc/tree-puzzle/AUTHORS
    • /usr/share/doc/tree-puzzle/COPYING
    • /usr/share/doc/tree-puzzle/ChangeLog
    • /usr/share/doc/tree-puzzle/EF.3trees
    • /usr/share/doc/tree-puzzle/EF.phy
    • /usr/share/doc/tree-puzzle/README
    • /usr/share/doc/tree-puzzle/atp6.a
    • /usr/share/doc/tree-puzzle/globin.a
    • /usr/share/doc/tree-puzzle/globin.ctrees
    • /usr/share/doc/tree-puzzle/globin.trees
    • /usr/share/doc/tree-puzzle/marswolf.ctrees
    • /usr/share/doc/tree-puzzle/marswolf.n
    • /usr/share/doc/tree-puzzle/marswolf.trees
    • /usr/share/doc/tree-puzzle/primates.b
    • /usr/share/doc/tree-puzzle/primates.ctrees
    • /usr/share/doc/tree-puzzle/primates.trees
    • /usr/share/doc/tree-puzzle/tree-puzzle.pdf

    Changelog

    2012-12-11 - Alex Burmashev <alex.burmashev@rosalab.ru> 5.2-6 + Revision: f168889 - merging with rosa2012.1 of project tree-puzzle

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